LIVIA — Tutorials
Step-by-step visual walkthroughs for each LIVIA tool
Learn LIVIA by Example
Each tutorial below walks through a real workflow with auto-advancing screenshots. Click any step to jump to it, or let it play through automatically. Ready to try it yourself? Click the Try it button.
The full tour
69 seconds, no sound: one prediction, from loading it to every map, 3D view and ChimeraX/PyMOL export, then cLIP on a whole screen.
Prediction Analysis
Load prediction files from any platform and analyze interface confidence
46 seconds, no sound: chain colors, map colors and labels, cartoon gaps, and SVG or PNG export, set on the Prediction Analysis page.
Load prediction files or pick a p53–MDM2 example
Bookmarklet for AFDB and FlyPredictome
One-click jump from AlphaFold DB or FlyPredictome straight into LIVIA
53 seconds, no sound: drag it to your bookmarks bar once, then one click from AlphaFold DB (MYC–MAX) or FlyPredictome (Yki–Sd) shows which residues of each protein bind.
Drag the blue button to your bookmarks bar to add the bookmarklet
Add the bookmarklet
Drag the blue button to your browser's bookmarks bar. On an AlphaFold DB entry or a FlyPredictome details page, click the bookmark and LIVIA opens the matching analysis page automatically.
Open in LIVIA
← drag to your bookmarks bar
If the bookmarks bar isn't visible, enable it with View → Show Bookmarks Bar or Ctrl/Cmd+Shift+B.
Where it works
AlphaFold DB dimer/complex → AFDB Dimer · AFDB monomer → AFDB Monomer Subdomain · FlyPredictome → FlyPredictome · FlyPredictome ortholog → Ortholog Interactome. On any other page it shows a short message and does nothing.
If drag doesn't work
Right-click the bookmarks bar → Add page, name it LIVIA, and paste this as the URL:
javascript:(function(){var u=location.href,p=location.origin+location.pathname,t=null,m;if(m=u.match(/alphafold\.ebi\.ac\.uk\/entry\/(AF-\d+)/))t='https://flyark.github.io/LIVIA/dimer.html?id='+m[1];else if(m=u.match(/alphafold\.ebi\.ac\.uk\/entry\/(?:AF-)?([A-Z][0-9][A-Z0-9]{3}[0-9](?:[A-Z][A-Z0-9]{2}[0-9])?)/i))t='https://flyark.github.io/LIVIA/monomer.html?id='+m[1].toUpperCase();else if(/flyrnai\.org\/tools\/fly_predictome\/web\/famdb_details[a-z_]*\//.test(u)){var mt=u.match(/\/(\d+)\/(\d+)\/?(?:[?#]|$)/);t='https://flyark.github.io/LIVIA/'+((/_ortho/.test(u)||(mt&&mt[1]!=='7227'))?'ortholog_predictome':'flypredictome')+'.html?url='+encodeURIComponent(p);}if(t)window.open(t,'_blank','noopener');else alert('LIVIA bookmarklet is up to date. This page is not an AlphaFold DB entry or a FlyPredictome details page, so there is nothing to open here.');})();